BlosSOM
Interactive dimensionality reduction on large datasets (EmbedSOM and FLOWER combined)
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Storage of the transformed data. More...
#include <trans_data.h>
Public Member Functions | |
size_t | dim () const |
Returns dimension of the transformed data. More... | |
void | touch_config () |
Notifies Sweeper that the config has been modified and that the data has to be recomputed. More... | |
void | update (const DataModel &dm, const RawDataStats &s, FrameStats &frame_stats) |
Recomputes the data if any of the config has been touched. More... | |
void | reset () |
Resets configurations to their initial values. More... | |
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Sweeper () | |
void | refresh (const Dirts &d) |
Force-refresh the whole range. More... | |
void | refresh (size_t n_dirts) |
std::tuple< size_t, size_t > | dirty_range (const Dirts &d) |
Find the range to refresh. More... | |
void | clean_range (const Dirts &d, size_t n) |
Clean a range of the cache. More... | |
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Cleaner () | |
bool | dirty (const Dirt &d) |
Returns true if the cache needs to be refreshed. More... | |
void | clean (const Dirt &d) |
Call this when the cache is refreshed. More... | |
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Dirts (size_t n=0) | |
Number of objects that should be cached. More... | |
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Dirt () | |
void | touch () |
Make the cache dirty. More... | |
Public Attributes | |
std::vector< float > | data |
Transformed data in the same format as DataModel::data. More... | |
std::vector< float > | sums |
Array representing sums for each dimension. More... | |
std::vector< float > | sqsums |
Array representing square sums for each dimension. More... | |
std::vector< TransConfig > | config |
Separate configurations for each dimension. More... | |
BatchSizeGen | batch_size_gen |
Cleaner | stat_watch |
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size_t | begin |
size_t | dirts |
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int | cleaned |
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size_t | n |
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int | dirt |
Storage of the transformed data.
Definition at line 71 of file trans_data.h.
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inline |
Returns dimension of the transformed data.
Definition at line 93 of file trans_data.h.
void TransData::reset | ( | ) |
Resets configurations to their initial values.
Definition at line 128 of file trans_data.cpp.
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inline |
Notifies Sweeper that the config has been modified and that the data has to be recomputed.
Definition at line 99 of file trans_data.h.
void TransData::update | ( | const DataModel & | dm, |
const RawDataStats & | s, | ||
FrameStats & | frame_stats | ||
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Recomputes the data if any of the config has been touched.
dm | Original data parsed from the input file. |
s | Statistics from the untransformed dataset. |
Definition at line 53 of file trans_data.cpp.
BatchSizeGen TransData::batch_size_gen |
Definition at line 86 of file trans_data.h.
std::vector<TransConfig> TransData::config |
Separate configurations for each dimension.
Definition at line 84 of file trans_data.h.
std::vector<float> TransData::data |
Transformed data in the same format as DataModel::data.
Definition at line 76 of file trans_data.h.
std::vector<float> TransData::sqsums |
Array representing square sums for each dimension.
Definition at line 81 of file trans_data.h.
Cleaner TransData::stat_watch |
Definition at line 101 of file trans_data.h.
std::vector<float> TransData::sums |
Array representing sums for each dimension.
Definition at line 79 of file trans_data.h.